release 6e71f00 · 8 sessions · DANDI:000021

cortexflow

coordinates, not states

How many dimensions the forecastable structure needs, whether the dominant axes hold still across an hour, and what the population’s movie-locked path looks like when eight mice are put in one frame.

dimension against skill

0.000.020.040.060.080.10251020PCA + VARlatent dimensionone-step R²
PCA + VAR refit at each latent dimension, mean over sessions. Forecast skill can peak at a lower dimension than reconstruction, because extra dimensions can carry variance that is not predictable from the past.
Table view
DimensionForecast R²Variance captured, trainVariance captured, test
20.0420.099−0.034
40.0580.1420.002
80.0740.2020.052
160.0910.2940.134
320.1030.4430.318

the same axes, an hour later

0.00.10.20.30.4251020Training periodTest periodlatent dimensionvariance captured
Share of population variance captured by the principal axes fitted on the training period, measured on the training period and on the test period. A gap means the dominant directions moved.

eight paths through one movie

Mean population state at each half-second of the 30 s clip, in the first two dimensions of a Procrustes-aligned PCA space. Black: early block (training period). Blue: late block (test period). Alignment used training-period responses only.

A projection for looking, not a finding. Loops, distances and apparent clusters here are not evidence of discrete brain states or of any mechanism.

  • 715093703

  • 719161530

  • 721123822

  • 732592105

  • 737581020

  • 739448407

  • 744228101

  • 754312389

stability and time constants

Principal angles compare the dominant 8-dimensional subspace early and late in each session; the split-half row is the same comparison within the training period alone, the noise floor. Eigenvalues of a latent VAR(1) do not depend on the basis, so the slowest decay constant can be compared across mice without alignment.

Per session
SessionMean cos angle, split halfMean cos angle, early vs lateRelative captureSlowest τ (s)
7150937030.6460.6230.3550.27
7191615300.6680.6120.6270.30
7211238220.6360.6570.7710.27
7394484070.7540.4870.3030.16
7325921050.7210.7410.8360.34
7375810200.5960.3760.4590.20
7442281010.6640.2710.1210.21
7543123890.7550.7180.5490.27